You can always use patching tool’s auto-discovery option to generate a profile. In case you are not able to use that following are the sample settings for JBoss. Just create default.properties under patching-tool directory
patching.mode=binary war.path=C:/jboss-eap-6.4/standalone/deployments/ROOT.war/ global.lib.path=C:/jboss-eap-6.4/modules/com/liferay/portal/main/
Key properties to remember are war.path which should point to your ROOT.war directory and global.lib.path which should point to your jar directory
Note: Tested with liferay 6.2 and Jboss 6.4. Example is for Windows OS but same should work for Unix based environments